NotAGoodName

[state 1000, spawning helper] triggerall = anim = 1000  
This does nothing.  It has no state type or anything.  Remove it.  If you really need that anim = 1000 trigger, add it to the next state.

Is your walk.back velocity positive?  It needs to be negative.

I think this is correct
 
320 / 250 = 1.28 (character is 1.28 times larger)
 
[99,50] / 1.28 = [77,39] ?

Give him a negative y velocity, an x velocity, and set gravity (or an appropriate y accel).
 
From Andore that I made
[State 300, 1] type = VelSet trigger1 = Time = 0 y = -9 [State 300, 1] type = VelSet trigger1 = 1 x = (p2dist x) / 25 [State 300, gravity] type = gravity trigger1 = 1

If something forces you into statedef 0, mugen doesn't defaultly have a means by which to make you fall down.
 
I modified my common1.cns to have this and it not only seems to fix that, but also makes characters work on Mario Stage
 
; Stand [Statedef 0] type = S physics = S sprpriority = 0 [State 0, 1] type = ChangeAnim trigger1 = Anim != 0 && Anim != 5 trigger2 = Anim = 5 && AnimTime = 0 ;Turn anim over value = 0 [State 0, 2] type = VelSet trigger1 = Time = 0 y = 0 [State 0, 3] ;Stop moving if low velocity or 4 ticks pass type = VelSet trigger1 = abs(vel x) < Const(movement.stand.friction.threshold) trigger2 = Time = 4 x = 0 [State 0, 4] ;Are you dead? type = ChangeState trigger1 = !alive value = 5050 [State 0, 5] ;Are you floating? type = ChangeState triggerall = pos y < 0 trigger1 = time > 1 value = 50

You need to modify your CFG file.  Use another mugen 1.0 cfg for example.  There's a bunch of differences to go over.

Mugen 1.0 screenpacks work on Mugen 1.1 just fine.  I still use my own Mugen 1.0 screenpack and haven't modified it since upgrading.

So where it changes to 200 (in CMD?) use...
 
value = ifelse(power >= 1000,300,200)

wtf.  Are you using the 1.1 exe?  Install it right and everything?  That error message should be impossible.  That is not what it displays when you attempt to run Mugen 1.1 in OpenGL on an unsupported video card.
 
 
*edit*
 
You know what?  I just tested it and yes.  You are using the wrong exe.

Step 1)  Make the intro animation blank
Step 2)  Create a helper that uses an animation that is the player running (or moving however you want).  Said helper should be spawned by the edge of the screen.
Step 3)  Destroy the helper when it reaches (or exceeds) the player's location
Step 4) Change player animation when helper is destroyed
 
Example from my AbigailSF9189
 
;---------------------------------------------------------------------------
; Introduce Yourself
[statedef 191]
type = S
ctrl = 0
anim = 8001
velset = 0,0

[state 191, 1]
type = AssertSpecial
trigger1 = 1
flag = Intro

[state 191, 2]
type = Helper
trigger1 = time = 0
helpertype = normal
name = "Intro"
ID = 190
pos = -320,0
postype = P1
stateno = 10190
facing = parent,facing

[state 191, 3]
type = ChangeAnim
trigger1 = time > 10
trigger1 = numhelper(190) = 0
value = 0

[state 191, 3]
type = ChangeState
trigger1 = numhelper(190) = 0
trigger2 = helper(190),parentdist x < 0
value = 0

;---------------------------------------------------------------------------
[statedef 10190]
type = S
ctrl = 0
anim = 100
velset = 4,0

[state 399, 2]
type = PlaySnd
channel = 0
trigger1 = AnimElem = 1
value = 0, 100

[state 10190, 3]
type = DestroySelf
trigger1 = parentdist x < 0

Really easy.  Not sure how you didn't find it.
 
In the CMD for the character, add a trigger to the -1 state for the move that uses the life variable
 
EXAMPLE...!
 
triggerall = (life <= lifemax/4)

It's only 25 files.  Just use/get a MSN account and download everything.  Then test every single stage.  It will take less time than someone trying to help you since you even didn't provide any information concerning which stage you actually want.
 
You can quickly test things with a .BAT file for quick VS.  Make a .BAT file (in your mugen directory) containing the following:
set p1=kfm set p3= set p2=kfm set p4= set st=kfm "mugen.exe" -p1 "%p1%" -p2 "%p2%" -p3 "%p3%" -p4 "%p4%" -s %st% -p1.color 1 -p2.color 1 -p3.color 1 -p4.color 1 -p1.ai 0 -p2.ai 1 -p3.ai 1 -p4.ai 1 Edit the file for whatever you want and run it.  p(1-4) is player and st is stage.  The rest should be self-explanatory.  Filling in player and stage info is the same as select.def, basically.

Methods for programming AI in winmugen characters are not exactly friendly for this sort of thing.  Just use VS mode and set the opponent to have AI (ctrl+2).

...
 
I don't know if I can help any further without actually seeing something.  But clearly you've got some hardcore screwed up indexing going on.
 
You need to figure out how to make your sprites have a proper palette.  Use the organize palette feature or whatever you have to do make a decent palette that is going to work for your sprites and then one way or another make all of them use the new palette.  You can load them in the palette editor and have FF3 re-index the images for you, dump and reimport all of your sprites letting FF3 reindex them, or whatever.  Point being, your sprites are clearly not indexed properly.

Try zapping it with

I've never used a 1.1 SFF, but chances are good that it requires palettes to be saved in the SFF.  So 1,1 is first, 1,2 is second, etc.
 
I would recommend not saving as 1.1 if at all possible, just to save some effort.

Don't put anything in program files directory on Vista or newer.

Open the SFF in FF3 and see what palette is being displayed.  If it's the one being displayed here, you need to use the change palette feature to manually change what palette is saved in the SFF.  If that's not it, it might be using what the DEF has set as the default palette.  All else fails, zap it with DOS2Win or whatever that one thing is and see if that helps.

This is a lot more complicated than copy and pasting files.  You need to move the correct graphics into one SFF, fix any conflicts, and reprogram the DEF accordingly.

In [stageinfo] there is xscale and yscale which applies to the entire stage.  If you modify this, you need to modify the bounds of the stage accordingly.  As far as I can tell, there is no scaling for BG states.

ok
 
Find this in dragon-ken.cns
 

[Statedef -3] ;-Este bg control permite cargar 5000% de poder cada vez que cambies a una ;-animacion como vez  he puesto todos las animaciones, asi la barra se llenara ;-mas pronto que el del oponente, si quieres que cargue solo  un poco ;- solo cambia el valor a 50 o 30 y  asi lo hara. ;-practicamente tendras barras de poder infinitas. [State -3, PowerAdd] type = PowerAdd triggerall = anim =[0,5300] trigger1 =time=0 value =5000 ignorehitpause =1 persistent = 1  
change type = poweradd to type = null;poweradd

Screw this.  I'll fix this POS.  brb
 
*edit*
lol, I did the fatality on the first try at both sizes.  Ok, enough bragging.  Back to work.
 
*edit*
Ok, that was easy.  http://www.4shared.com/zip/b1DTGb8qce/a0sub1.html
 
Also, it's not 100% compatible with cns scaling, but I'll leave it up to you.  It's not like I go through all my Capcom characters and edit them for xscale = .833 even though I should.

Open the def file in notepad.  Change mugenversion = (some stupid date) to mugenversion = 1.0
 
If you're using winmugen, quit using winmugen.

You have to open the character and manually modify the palettes that are stored in the SFF.
 
0) Back up the SFF for the character.  Travesties happen.
 
1)  So open up whichever character in Fighter Factory 3.  You're going to want the newest version for this.
 
2)  Go to sprites mode and open up the advanced palette editor.
 
3)  Down at the bottom above the left palette pane, you should see a slider that starts on "1,1".  That's the first palette.  Select the palette you want to change.
 
4) Open a the palette that you want in this slot (Open palette from a file...).  [Top left button.]
 
5)  Save by pushing "Commit changes to current palette..."  [bottom left button.]
 
6) Repeat until finished.  Save SFF.  Now you're done.

[state 183,lol]
type=assertspecial
trigger1=animelem<(insertlastframenumberhere)
flag=roundnotover
 
 
Or you could use time<something as your trigger.  Whatever works.